1997

Naglis, S. 1997. Alpine Arten der Familie Dolichopodidae (Diptera) aus den Schweizer Alpen [Alpine species of the family Dolichopodidae (Diptera) from the Swiss Alps]. Studia dipterologica 4 (1): 137–142.

1998

Naglis, S. 1998. Dolichopodidae (Diptera) aus der Südschweiz [Dolichopodidae (Diptera) from southern Switzerland]. Mitteilungen der Schweizerischen Entomologischen Gesellschaft 71 (1-2): 169–176.

1999

Naglis, S. 1999. Dolichopodidae (Diptera) neu für die Schweiz mit Ergänzungen zur Diptera Checklist [Dolichopodidae (Diptera) new for Switzerland with supplements to the Diptera Checklist]. Mitteilungen der Schweizerischen Entomologischen Gesellschaft 72 (1-2): 31–38.

Naglis, S. 1999. A new species of Trigonocera Becker (Diptera: Dolichopodidae) from Tropical Africa. Studia dipterologica 6 (2): 333–335.

2000

Naglis, S. 2000. Six new species of Systenus (Diptera: Dolichopodidae) from Brazil, with a key to the Neotropical species. Studia dipterologica 7 (1): 59–68.

Naglis, S. 2000. Two new species of Mesorhaga (Diptera: Dolichopodidae) from Brazil, with a key to the Neotropical species. Bulletin de l’Institut Royal des Sciences Naturelles de Belgique 70: 251–254.

2001

• Naglis, S. 2001: Revision of the Neotropical Neurigoninae (Diptera: Dolichopodidae) I: Coeloglutus Aldrich, Neotonnoiria Robinson, and Paracoeloglutus gen. nov., with the definition of the tribe Coeloglutini stat. nov. Studia dipterologica, 8(1): 189–206. ISSN: 0945-3954 [not seen]

2002

• Naglis, S. 2002: Revision of the Neotropical Neurigoninae (Diptera: Dolichopodidae) II: Argentinia Parent, Dactylomyia Aldrich, Macrodactylomyia gen. nov., and Systenoides gen. nov., with the definition of a new tribe Dactylomyiini. Studia dipterologica, 8(2): 475–504. ISSN: 0945-3954 [not seen]
• Naglis, S. 2002: Preliminary results of a revision of the Neotropical Neurigoninae (Dolichopodidae). Fifth International Congress of Dipterology, Abstracts Volume 168-169.
• Naglis, S. 2002: Revision of the Neotropical Neurigoninae (Diptera: Dolichopodidae) III: Bickelomyia gen. nov., with the definition of a new tribe Neurigonini. Studia dipterologica, 9(1): 225–241. ISSN: 0945-3954 [not seen]

2003

Artmann-Graf, G., Chvala, M., Naglis, S. 2003. Sechs für die Schweiz neue Dipterenarten (Tabanidae, Empididae, Dolichopodidae) und Bemerkungen zur Nomenklatur einer Schwebefliegenart (Syrphidae). Mitteilungen der Entomologischen Gesellschaft Basel 53: 74–78.

Naglis, S. 2003. Revision of the Neotropical Neurigoninae (Diptera: Dolichopodidae) IV: Viridigona gen. nov. Studia dipterologica 9 (2): 561–604.

• Naglis, S. 2003: Revision of the Neotropical Neurigoninae (Diptera: Dolichopodidae) V: Neurigona Rondani. Studia dipterologica, 10(1): 267–314. ISSN: 0945-3954 [not seen]

2009

Naglis, S. 2009. Neue Funde von Langbeinfliegen (Diptera, Dolichopodidae) für die Schweizer Fauna. [New records of long-legged Flies (Diptera, Dolichopodidae) for the Swiss Fauna]. Entomo Helvetica, Volume 2.

Naglis, S. 2009. Checkliste der Langbeinfliegen (Diptera, Dolichopodidae) der Schweiz. [Checklist oft the long-legged Flies (Diptera, Dolichopodidae) of Switzerland]. Entomo Helvetica, Volume 2.

Naglis, S. 2009. A remarkable new species of Chrysotus (Diptera, Dolichopodidae) from Montenegro. Studia dipterologica, in press

Naglis, S. 2009. Two new species of Chrysotus (Diptera, Dolichopodidae) from Switzerland. Mitteilungen der Schweizerischen Entomologischen Gesellschaft, in press

2011

• Naglis, S. 2011: New records of Dolichopodinae (Diptera, Dolichopodidae) from Turkey, with the description of new species of Sybistroma Meigen and Tachytrechus Haliday. Mitteilungen der Schweizerischen Entomologischen Gesellschaft, 84(1-2): 23–33. [not seen]

• Naglis, S., Grootaert, P. & Wei, L. 2011. Srilankamyia – a new dolichopodine genus (Diptera, Dolichopodidae). Centre for Entomological Studies Ankara miscellaneous papers (155): 1–7. Internet Archive Reference page. 

• Naglis, S. & Grootaert, P. 2011. A remarkable new species of Rhaphium Meigen (Diptera, Dolichopodidae) from Sri Lanka. Zootaxa 2991: 44–48. Preview Reference page. 

2012

• Naglis, S. & Bickel, D.J. 2012. Medetera (Diptera, Dolichopodidae) of Sri Lanka. Zootaxa 3188: 55–63. Preview Reference page. 

• Naglis, S. & Grootaert, P. 2012. Review of the genus Griphophanes Grootaert & Meuffels (Diptera, Dolichopodidae), with the description of ten new species from Sri Lanka. Zootaxa 3525: 51–64. Preview Reference page. 

2013

• Naglis, S. 2013. New records of Medeterinae (Diptera, Dolichopodidae) from Turkey, with the description of three new species of Medetera Fischer von Waldheim. Mitteilungen der Schweizerischen Entomologischen Gesellschaft 86(3-4): 165–174. [Not seen] Reference page. 

• Naglis, S., Grootaert, P. & Brooks, S.E. 2013. Phoomyia, a new genus of Dolichopodinae from the Oriental Region (Diptera: Dolichopodidae). Zootaxa 3666(1): 93–99. DOI: 10.11646/zootaxa.3666.1.9 Reference page. 

• Naglis, S., Grootaert, P. & Brooks, S.E. 2013. Erratum: STEFAN NAGLIS, PATRICK GROOTAERT& SCOTT E. BROOKS (2013) Phoomyia, a new genus of Dolichopodinae from the Oriental Region (Diptera: Dolichopodidae). Zootaxa, 3666(1), 83–99. Zootaxa 3691(1): 200–200. DOI: 10.11646/zootaxa.3691.1.10 Reference page. 

2014

• Naglis, S. 2014. Order Diptera, family Dolichopodidae. Two new genera of the subfamily Diaphorinae. Pp 725–731. In: van Harten, A. (ed.) Arthropod fauna of the United Arab Emirates. Volume 5. Department of the (UAE) President's Affairs, UAE. 744 pp. ISBN 9789948220862 DOI: 10.5167/uzh-109651 PDF Reference page. 

2015

• Naglis, S. & Barták, M. 2015. Dolichopodidae (Diptera) from the Iberian Peninsula, with description of three new species. Zootaxa 3964(1): 125–137. DOI: 10.11646/zootaxa.3964.1.9 Preview (PDF). Reference page. 

• Negrobov, O.P. & Naglis, S. 2015. Two new species of Medetera Fischer von Waldheim (Diptera, Dolichopodidae) from Russia and Mongolia. Zootaxa 3964(3): 386–390. DOI: 10.11646/zootaxa.3964.3.8 . Preview (PDF) Reference page. 

2017

• Naglis, S. 2017. A new species of Systenus Loew (Diptera, Dolichopodidae) from Croatia. Alpine Entomology 1: 39–41. DOI: 10.3897/alpineentomology.1.20462 . Reference page. 

• Naglis, S. & Negrobov, O.P. 2017. West Palaearctic species of the Hercostomus species-group III (Diptera, Dolichopodidae), with description of a new species from Turkey. Alpine Entomology 1: 33–38. DOI: 10.3897/alpento.1.20463 . Reference page. 

2018

• Borkent, A., Brown, B.V., Adler, P.H., Amorim, D. de S., Barber, K.N., Bickel, D.J., Boucher, S., Brooks, S.E., Burger, J., Burington, Z.L., Capellari, R.S., Costa, D.N.R., Cumming, J.M., Curler, G., Dick, C.W., Epler, J.H., Fisher, E., Gaimari, S.D., Gelhaus, J., Grimaldi, D.A., Hash, J., Hauser, M., Hippa, H., Ibáñez-Bernal, S., Jaschhof, M., Kameneva, E.P., Kerr, P.H., Korneyev, V., Korytkowski, C.A., Kung, G-A., Kvifte, G.M., Lonsdale, O., Marshal, S.A., Mathis, W.N., Michelsen, V., Naglis, S., Norrbom, A.L., Paiero, S.M., Pape, T., Pereira-Colavite, A., Pollet, M., Rochefort, S., Rung, A., Runyon, J., Savage, J., Silva, V.C., Sinclair, B.J., Skevington, J.H., Stireman, J.O. III, Swann, J., Vilkamaa, P., Wheeler, T., Whitworth, T.L., Wong, M.A., Wood, D.M., Woodley, N.E., Yau, T., Zavortnik, T.J. & Zumbado, M.A. 2018. Remarkable fly (Diptera) diversity in a patch of Costa Rican cloud forest: Why inventory is a vital science. Zootaxa 4402(1): 53–90. DOI: 10.11646/zootaxa.4402.1.3 . Full article (PDF) Reference page.