1847

• McCoy, F. 1847. XV.—On the fossil botany and zoology of the rocks associated with the coal of Australia. Annals and Magazine of Natural History 20(132): 145–157. DOI: 10.1080/037454809496019 Reference page. 

• McCoy, F. 1847. XV.- XXVIII.- On the fossil botany and zoology of the rocks associated with the coal of Australia (continued from p. 236.) Annals and Magazine of Natural History 20(134): 298–312. DOI: 10.1080/037454809496054 Reference page. 

1848

• M'Coy, F. 1848. On some new fossil fishes of the Carboniferous period. Annals and Magazine of Natural History 2: 1–10. Reference page. 

1849

• M'Coy F., 1849. XLI.—On the classification of some British fossil Crustacea, with notices of new forms in the University Collection at Cambridge. Annals and Magazine of natural History, Taylor & Francis.
• M'Coy F., 1849. I.—On some new genera and species of palæozoic corals and foraminifera. Annals and magazine of Natural History, Taylor & Francis.
• M'Coy F., 1849. XIII.—On some new genera and species of Palæozoic corals and Foraminifera. Annals and Magazine of Natural history, Taylor & Francis.
• M'Coy F., 1849. XXVIII.—On some new Palæozoic echinodermata. Annals and Magazine of Natural History, Taylor & Francis.

1874

• McCoy, F. 1874. Prodromus of the Palaeontology of Victoria: or, Figures and descriptions of Victorian organic remains. Decade I. Geological Survey of Victoria. Melbourne, Australia: 43 pages. DOI: 10.5962/bhl.title.13870 Reference page. 

1875

• McCoy, F. 1875. Prodromus of the Palaeontology of Victoria: or, Figures and descriptions of Victorian organic remains. Decade II. Geological Survey of Victoria. Melbourne, Australia: 37 pages. DOI: 10.5962/bhl.title.13870 Reference page. 

1876

• McCoy, F. 1876. Prodromus of the Palaeontology of Victoria: or, Figures and descriptions of Victorian organic remains. Decade III. Geological Survey of Victoria. Melbourne, Australia: 40 pages. DOI: 10.5962/bhl.title.13870 Reference page. 

• McCoy, F. 1876. Prodromus of the Palaeontology of Victoria: or, Figures and descriptions of Victorian organic remains. Decade IV. Geological Survey of Victoria. Melbourne, Australia: 32 pages. DOI: 10.5962/bhl.title.13870 Reference page. 

1877

• McCoy, F. 1877. Prodromus of the Palaeontology of Victoria: or, Figures and descriptions of Victorian organic remains. Decade V. Geological Survey of Victoria. Melbourne, Australia: 41 pages. DOI: 10.5962/bhl.title.13870 Reference page. 

1879

• McCoy, F. 1879. Prodromus of the Palaeontology of Victoria: or, Figures and descriptions of Victorian organic remains. Decade VI. Geological Survey of Victoria. Melbourne, Australia: 42 pages. DOI: 10.5962/bhl.title.13870 Reference page. 

1882

• McCoy, F. 1882. Prodromus of the Palaeontology of Victoria: or, Figures and descriptions of Victorian organic remains. Decade VII. Geological Survey of Victoria. Melbourne, Australia: 30 pages. DOI: 10.5962/bhl.title.13870 Reference page. 

1888

• McCoy, F. 1888. Prodromus of the zoology of Victoria; figures and descriptions of the living species of all classes of the Victorial indigenous animals. Government Printer, Melbourne. Reference page. 

1898

• McCoy, F. 1898. Note on an additional genus of fossil plants found in the Bacchus Marsh Sandstone by Geo. Sweet, Esq., F.G.S. Proceedings of the Royal Society of Victoria 10: 285–286. Reference page.