2002

• Prokofiev, A. M., 2002: First finding of an articulated actinopterygian skeleton from the Upper Devonian of Siberia and a reappraisal of the family Moythomasiidae Kazantseva, 1971 (Osteichthyes). Paleontological Research, 6: 321-327. BHL

2005

• Prokofiev, A.M. 2005. O sredneeocenovom vozraste dvuch vidov kostistych ryb (Teleostei), oschibocna ukazanych dlja nižnego oligocena. The Integrated Scientific Journal 7: 61–62. [In Russian]. Reference page. 

• Prokofiev, A.M. 2005. Meso- and benthopelagic fish community of the Middle Eocene Dabachanian Formation of Georgia. Kaupia 14: 92. Reference page. 

2007

• Sytchevskaya, E.K. & Prokofiev, A.M. 2007. A dragonet (Perciformes: Callionymidae) from the Middle Miocene of southern Russia. Voprosy Ikhtiologii 47(6): 750–756. / Journal of Ichthyology 47(9): 708-714. DOI: 10.1134/S0032945207090044 Reference page. 

2009

• Prokofiev, A. M., 2009: Problems of the classification and phylogeny of Nemacheiline loaches of the group lacking the preethmoid I (Cypriniformes: Balitoridae: Nemacheilinae). Journal of Ichthyology 49 (10): 874-898.

• Prokofiev, A. M., 2009: A new species of Lubricogobius (Perciformes: Gobiidae) from Nha Trang Bay, Vietnam. Journal of Ichthyology 49 (5): 416-419. [In Russian in Voprosy Ikhtiologii 49 (3): 429-432.] Reference page. 

2010

• Prokofiev, A.M. 2010. Morphological classification of loaches (Nemacheilinae). Journal of Ichthyology 50(10): 827-913. PDF Reference page. 

2011

• Sytchevskaya, E.K. & Prokofiev, A.M. 2011. On the status and volume of the late paleocene family Asianthidae (Percoidei). Voprosy Ikhtiologii 51(1): 5–18. / Journal of Ichthyology 51(1): 1-13. DOI: 10.1134/S0032945211010139 Reference page. 

2014

• Prokofiev, A.M. 2014. New and noteworthy scarab beetles from Asia and America (Coleoptera Lamellicornia). Calodema 330: 1–25. PDF Reference page. 

2015

• Прокофьев / Prokofiev, A.M., 2015: РОД STALIX (OPISTOGNATHIDAE) ВО ВЬЕТНАМЕ. ВОПРОСЫ ИХТИОЛОГИИ, 55 (4): 487–491.

• Prokofiev, A. 2015. A new species of Barbatula from the Russian Altai (Teleostei: Nemacheilidae). Zootaxa 4052(4): 457–464. DOI: 10.11646/zootaxa.4052.4.3 Preview (PDF). Reference page. 

• Prokofiev, A.M. 2015b. New tribe of chafers from Vietnam (Coleoptera, Scarabaeidae, Melolonthinae). Amurian zoological journal 7(1): 20-24. Full article (PDF).Reference page. 

2016

• Fraser, T.H. & Prokofiev, A.M. 2016. A new genus and species of cardinalfish (Percomorpha, Apogonidae, Sphaeramiini) from the coastal waters of Vietnam: luminescent or not? Zootaxa 4144(2): 227–242. DOI: 10.11646/zootaxa.4144.2.5 . Reference page. 

• Prokofiev, A.M. 2016. New species Amblyeleotris (Gobiidae) from Phan Thiet Bay (South China Sea, Vietnam). Voprosy Ikhtiologii 56(3): 368–370. [In Russian, English translation in Journal of ichthyology 56(3): 467-469. (2016) DOI: 10.1134/S0032945216030152 ] Reference page. 

• Prokofiev, A.M., Gon, O. & Psomadakis, P.N. 2016. A new species of Neobathyclupea from the northern Indian Ocean with comments on N. malayana (Teleostei, Perciformes, Bathyclupeidae). Zootaxa 4208(5): 474–484. DOI: 10.11646/zootaxa.4208.5.5 . Reference page. 
• Prokofiev, A.M. 2016. New genera and species of the Papuan Leucopholini and Melolonthini (Coleoptera, Scarabaeidae: Melolonthinae). Euroasian entomological journal 15(1): 68–74.

2017

• Schwarzhans, W. & Prokofiev, A.W. 2017. Reappraisal of Synagrops Günther, 1887 with rehabilitation and revision of Parascombrops Alcock, 1889 including description of seven new species and two new genera (Perciformes: Acropomatidae). Zootaxa 4260(1): 1–74. DOI: 10.11646/zootaxa.4260.1.1 . Reference page. 

2018

• Prokofiev, A.M. 2018. A new species of Barbatula from the headwaters of the Bulgan River in western Mongolia (Teleostei: Nemacheilidae). Zootaxa 4407(2): 267–274. DOI: 10.11646/zootaxa.4407.2.7 Reference page.