Microstigma may mean:
- In the Regnum Animalia - Microstigma Rambur, 1842 (Odonata : Coenagrionidae)
- In the Regnum Plantae - Microstigma Trautvetter (Magnoliophyta : Brassicaceae)
- In the Regnum Chromista – Microstigma (Cleve) F.Meister, 1919 (Heterokonta : Bacillariophyceae)
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