1960s

• Wynne, M.J. & Daniels, K. 1966. Cumathamnion, a new genus of the Delesseriaceae (Rhodophyta). Phycologia 6: 13–28. DOI: 10.2216/i0031-8884-6-1-13.1

• Wynne, M.J. 1969. Life history and systematic studies of some Pacific North American Phaeophyceae (brown algae). University of California Publications in Botany 50: 1–88. Reference page. 
• Wynne, M.J. 1969. Platysiphonia decumbens sp. nov., a new member of the Sarcomenia group (Rhodophyta) from Washington. Journal of Phycology 5: 190–202.

• Norris, R.E. & Wynne, M.J. 1969 '1968'. Notes on marine algae of Washington and southern British Columbia. III. Syesis 1: 133–146. Reference page. 

1970s

• Wynne, M.J. 1970. Marine algae of Amchitka Island (Aleutian Islands). I. Delesseriaceae. Syesis 3: 95–144. Reference page. 
• Wynne, M.J. 1970. À propos d'un genre nouveau, Rhodolachne (Rhodomelaceae), de l'Océan Indien. Compte Rendu Hebdomadaire des Séances de l’Académie des Sciences. Paris. Série D 270: 1780–1782, 10 figs.

• Wynne, M.J. 1971. Concerning the phaeophycean genera Analipus and Heterochordaria. Phycologia 10: 169–175. Reference page. 

• Wynne, M.J., McBride, D.L. & West, J.A. 1973. Polyneuropsis stolonifera gen. et sp. nov. (Delesseriaceae, Rhodophyta) from the Pacific coast of North America. Syesis 6: 243–253. Reference page. 

• Wynne, M.J. 1977. Mikamiella, a new genus of Delesseriaceae (Rhodophyta) from the North Pacific. Bulletin of the Japanese Society for Phycology 25 (Suppl.): 395–402. Reference page. 

• Kraft, G.T. & Wynne, M.J. 1979. An earlier name for the Atlantic North American red alga Neoagardhiella baileyi (Solieriaceae, Gigartinales). Phycologia 18: 325–329, 7 figs. Reference page. 

1980s

• Wynne, M.J. 1980. Boreothamnion (Ceramiaceae, Ceramiales), a new red algal genus from Alaska. Contributions from the University of Michigan Herbarium 14: 209–219. BHL Reference page. 

• Wynne, M.J. 1980. Beringiella (Rhodomelaceae, Ceramiales), a new red algal genus from Alaska. Contributions from the University of Michigan Herbarium 14: 221–229. BHL Reference page. 
• Wynne, M.J. 1980. Pleuroblepharidella nom nov. (Bonnemaisoniaceae, Rhodophyceae) proposed for Pleuroblepharis Wynne. Taxon 29: 325–328.

• Wynne, M.J. 1981. Phaeophyta: Morphology and Classification. In: Lobban, C.S. & Wynne, M.J. 1981. The Biology of seaweeds. Botanical Monographs 17. University of California Press. p. 52–85. Google Books. Reference page. 
• Wynne, M.J. 1981. A new species of Rhodophyllis (Gigartinales, Rhodophyta) from Amchitka Island, The Aleutians. Proceedings of the International Seaweed Symposium 8: 528–534.

• Lindstrom, S.C. & Wynne, M.J. 1981. Tokidaea chilkatensis sp. nov. and T. serrata (Wynne) comb. nov. (Ceramiaceae, Rhodophyta) from Alaska. Syesis 14: 33–43. Reference page. 

• Wynne, M.J. 1982. Duckerella, a new genus of Delesseriaceae (Rhodophyta) from Madagascar. Phycologia 21: 236–242, 17 figs. Reference page. 

• Wynne, M.J. & Norris, R.E. 1982. Schizochlaenion gen nov. (Rhodomelaceae, Ceramiales), a new red algal genus from the north-eastern North Pacific. Phycologia 21: 288–298. Reference page. 

• Wynne, M.J. 1983. The current status of genera in the Delesseriaceae (Rhodophyta). Botanica Marina 26: 437–450. Reference page. 
• Wynne, M.J., Millar, A.J.K. & Kraft, G.T. 1984. Platysiphonia marginalis sp. nov. (Delesseriaceae), a new red alga from eastern Australia. Phycologia 23: 273–279.

• Wynne, M.J. 1985. Taxonomic notes on some Delesseriaceae (Rhodophyta) occurring in southern California and Mexico. Bulletin of the Southern California Academy of Sciences 84: 164–171, 13 figs, 1 table. Reference page. 

• Wynne, M.J. 1985. Evidence for the transfer of Cyclospora curtissiae J. Agardh to Carpoblepharis (Ceramiaceae, Rhodophyta). Phycologia 24: 49–54, 11 figs. Reference page. 

• Wynne, M.J. 1985. Concerning the names Scagelia corallina and Heterosiphonia wurdmannii (Ceramiales, Rhodophyta). Cryptogamie, Algologie 6: 81–90, 4 figs. Reference page. 

• Wynne, M.J. 1985. Microcladia exserta sp. nov. (Ceramiaceae, Rhodophyta) from the east coast of South Africa. British Phycological Journal 20: 193–200, 23 figs. Reference page. 

• Wynne, M.J. 1985. Neoholmesia natalensis, a new member of the Delesseriaceae (Rhodophyceae) from South Africa. Japanese Journal of Phycology 33: 118–126, 13 figs. Reference page. 

• Wynne, M.J. 1985. Nomenclatural assessment of Goniotrichum Kützing, Erythrotrichia Areschoug, Diconia Harvey, and Stylonema Reinsch (Rhodophyta). Taxon 34: 502–505. Reference page. 

• Wynne, M.J. 1985. Two new species of Tayloriella (Rhodomelaceae, Rhodophyta) from the northeastern North Pacific. Journal of Phycology 21: 107–114. Reference page. 

• Wynne, M.J. 1985. Taxonomic delineation of Phycodrina (Delesseriaceae, Rhodophyta), a new genus endemic to the Galápagos. Systematic Botany 10(1): 73–80. DOI: 10.2307/2418436 . Reference page. 
• Ballantine, D.L. & Wynne, M.J. 1985. Platysiphonia and Apoglossum (Delesseriaceae, Rhodophyta) in the tropical western Atlantic. Phycologia 24: 459–465.

• Wynne, M.J. 1986. Porphyrostromium Trevisan (1848) vs Erythrotrichopeltis Kornmann (1984) (Rhodophyta). Taxon 35: 328–329. Reference page. 

• Wynne, M.J. 1986. Report on a collection of benthic marine algae from the Namibian coast (southwestern Africa). Nova Hedwigia 43: 311–355, 24 pls. Reference page. 

• Wynne, M.J. 1986. A checklist of benthic marine algae of the tropical and subtropical western Atlantic. Canadian Journal of Botany 64: 2239–2281. Reference page. 

• Ballantine, D.L. & Wynne, M.J. 1986. Notes on the marine algae of Puerto Rico. II. Additions of Ceramiaceae (Rhodophyta) including Ceramium verongiae sp. nov. Botanica Marina 29: 497-502. Reference page. 

• Wynne, M.J. 1988. Austrofolium gen nov. (Delesseriaceae, Rhodophyta) from the Pacific coast of South America. Systematic Botany 13: 111–119. Reference page. 

• Wynne, M.J. 1989. Taxonomic observations on some marine algae in Herbarium Hamburgense. Nova Hedwigia 48: 419–430, 3 plates [= 9 figs]. Reference page. 

• Wynne, M.J. & Scott, F.J. 1989. Phitycolax, a new genus of adelphoparasitic red algae from Ile Amsterdam, southern Indian Ocean. Cryptogamie, Algologie 10: 23–32, 11 figs, 1 table. Reference page. 

1990s

• Wynne, M.J. 1990. Observations on Haraldia and Calloseris, two rare genera of Delesseriaceae (Rhodophyta) from the Western Atlantic. Contributions from the University of Michigan Herbarium 17: 327–334. BHL Reference page. 
• Wynne, M.J. 1991. A change in the name of the type of Chondria C. Agardh (Rhodomelaceae, Rhodophyta). Taxon 40: 316–318.

• Wynne, M.J. & Norris, R.E. 1991. Branchioglossum pygmaeum sp. nov. and new records of other Delesseriaceous algae (Rhodophyta) from Natal, South Africa. Phycologia 30: 262–271, 26 figs. Reference page. 

• Wynne, M.J. & Heine, J.N. 1992. Collections of marine red algae from St. Matthew and St. Lawrence Islands, the Bering Sea. Nova Hedwigia 55: 55–97. Reference page. 

• Millar, A.J.K. & Wynne, M.J. 1992. Branchioglossum epiphyticum sp. nov. (Delesseriaceae, Rhodophyta), with a discussion of the generic boundaries between Branchioglossum and Hypoglossum. Phycologia 31: 231–239, 16 figs. Reference page. 

• Millar, A.J.K. & Wynne, M.J. 1992. Patulophycus eclipes gen. et sp. nov. (Delesseriaceae, Rhodophyta) from the Southwestern Pacific. Systematic Botany 17: 409–416. Reference page. 

• Millar, A.J.K. & Wynne, M.J. 1992. Valeriemaya gen. nov. (Rhodophyta), with a discussion of apical organizations within the Delesseriaceae. British Phycological Journal 27: 131–143. Reference page. 
• Kraft, G.T. & Wynne, M.J. 1992. Heterostroma nereidiis gen. et sp. nov. (Rhodophyta), a dorsiventral rhodomelaceous marine alga from Western Australia. Phycologia 31: 16–36, 36 figs.
• Millar, A.J.K. & Wynne, M.J. 1992. An account of Delesseria aemula sp. nov. (Delesseriaceae, Rhodophyta) from New South Wales, Australia. Japanese Journal of Phycology 40: 111–119.

• Wynne, M.J. 1993. Benthic marine algae from the Maldives, Indian ocean, collected during the R/V Te Vega expedition. Contributions of the University of Michigan Herbarium 19: 5–30, 14 figs. BHL Reference page. 
• Wynne, M.J. 1993. Recognition of Rhodophyllis centrocarpa (Montagne) comb. nov. (Cystocloniaceae, Rhodophyta) from Chile. Cryptogamie, Algologie 14: 145–152, 13 figs.

• Wynne, M.J., Ardré, F. & Silva, P.C. 1993. The identity of Fucus pepricarpos Poiret. Cryptogamie, Algologie 14(1): 37–42, 6 figs. Reference page. 

• Wynne, M.J. 1994. Proposal to conserve Dictyococcus against Cyanoderma (Neochloridaceae, Chlorophyta). Taxon 43: 643–644. Reference page. 

• Wynne, M.J. 1995. Benthic marine algae from the Seychelles collected during the R/V Te Vega Indian Ocean Expedition. Contributions from the University of Michigan Herbarium 20: 261–346, 89 figs. BHL Reference page. 

• Wynne, M.J. & Schneider, C.W. 1996. Frikkiella gen. nov. (Delesseriaceae, Rhodophyta) from Bermuda and the Caribbean Sea. Systematic Botany 21: 77–84, 21 figs. Reference page. 

• Kraft, G.T. & Wynne, M.J. 1996. Delineation of the genera Struvea Sonder and Phyllodictyon J.E. Gray (Cladophorales, Chlorophyta). Phycological Research 44: 129–143, 28 figs. DOI: 10.1111/j.1440-1835.1996.tb00042.x . hdl: 2027.42/74104 . Reference page. 

• Wynne, M.J. 1997. Taxonomic and nomenclatural notes on the Delesseriaceae (Rhodophyta). Contributions from the University of Michigan Herbarium 21: 319–334. BHL Reference page. 

• Wynne, M.J. 1997. Rosenvingea antillarum (P. Crouan & H. Crouan) comb. nov. to replace R. floridana (W.R. Taylor) W.R. Taylor (Scytosiphonales, Phaeophyta). Cryptogamie, Algologie 18: 331–336. Reference page. 

• Wynne, M.J. 1998. Champia gigantea and Lomentaria strumosa (Rhodymeniales): two new red algae from the Sultanate of Oman. Botanica Marina 41: 571–580, 22 figs, 1 table. Reference page. 
• Ballantine, D.L. & Wynne, M.J. 1998. Ptilothamnion speluncarum (Collins & Herv.) comb. nov. (Ceramiaceae, Rhodophyta) from Puerto Rico. Cryptogamie, Algologie 19(3): 223–229, 6 figs.

• Wynne, M.J. 1999. Pseudogrinnellia barrattiae gen. et sp. nov., a new member of the red algal family Delesseriaceae from the Sultanate of Oman. Botanica Marina 42: 37–42, 9 figs, 1 table. Reference page. 
• Wynne, M.J. 1999. New records of benthic marine algae from the Sultanate of Oman. Contributions from the University of Michigan Herbarium 22: 189–208, 19 figs.

• De Clerck, O., Wynne, M.J. & Coppejans, E. 1999. Vanvoorstia incipiens sp. nov. (Delesseriaceae, Rhodophyta) from Tanzania, East Africa. Phycologia 38: 394–400, 27 figs, 1 table. Reference page. 

2000s

• Huisman, J.M., Ballantine, D. & Wynne, M.J. 2001 '2000'. Liagorothamnion mucoides gen. et sp. nov. (Ceramiaceae, Rhodophyta) from the Caribbean Sea. Phycologia 39: 507–516. Reference page. 

• Wynne, M.J. 2001. Stirnia prolifera gen. et sp. nov. (Rhodymeniales, Rhodophyta) from the Sultanate of Oman. Botanica Marina 44: 163–169. Reference page. 

• Wynne, M.J. 2001. The tribes of the Delesseriaceae (Ceramiales, Rhodophyta). Contributions from the University of Michigan Herbarium 23: 407–417. BHL Reference page. 
• Wynne, M.J. 2001. The identity of Aspidophora Montagne (Delesseriaceae, Rhodophyta). Cryptogamie, Algologie 22: 285–295.

• Wynne, M.J. 2002. Plocamium cirrhosum comb. nov. (Plocamiales, Rhodophyta) to replace P. costatum. New Zealand Journal of Botany 40: 137–142. Reference page. 

• Wynne, M.J. 2002. Turbinaria foliosa sp. nov. (Fucales, Phaeophyceae) from the Sultanate of Oman, with a census of currently recognized species in the genus Turbinaria. Phycological Research 50(4): 283–293. Reference page. 

• Wynne, M.J. & De Jong, Y.S.D.M. 2002. Dipterocladia arabiensis sp. nov. (Dasyaceae, Rhodophyta) from the Sultanate of Oman. Botanica Marina 45: 77–86. Reference page. 

• De Clerck, O., Wynne, M.J. & Stegenga, H. 2002. Valeriemaya seagriefii sp. nov. (Delesseriaceae, Rhodophyta) from South Africa. South African Journal of Botany 68: 199–203. Reference page. 

• Wynne, M.J. 2003. The identity of Laminaria ensiformis Delle Chiaje (Phaeophyceae). Webbia 58: 471–476. Reference page. 

• Wynne, M.J. 2003. Centroceras secundum sp. nov. (Ceramiaceae, Rhodophyta) from the Sultanate of Oman. Nova Hedwigia 77: 125–137. Reference page. 

• Wynne, M.J. 2003. Leveillea major sp. nov. (Rhodomelaceae, Rhodophyta) from the Sultanate of Oman. Botanica Marina 46: 357–365. Reference page. 

• Wynne, M.J. 2003. Sporochnus anomalus (Pallas) comb. nov. (Sporochnales, Phaeophyceae), the oldest available name for Sporochnus gaertnera C. Agardh. Cryptogamie, Algologie 24: 75–81. Reference page. 
• Wynne, M.J. 2003. Jolyna furcata sp. nov. (Scytosiphonales, Phaeophyceae) from the Sultanate of Oman. Cryptogamie, Algologie 24(1): 51–61.

• Ballantine, D.L., García, M., Gómez, S. & Wynne, M.J. 2003. Schimmelmannia venezuelensis sp. nov. (Gloiosiphoniaceae, Rhodophyta) from Venezuela. Botanica Marina 46: 450–455. DOI: 10.1515/BOT.2003.045 Reference page. 

• Wynne, M.J. 2004. Myriogloea pedicellata sp. nov. (Chordariaceae, Phaeophyceae) from the Sultanate of Oman, northern Arabian Sea. Cryptogamie, Algologie 25: 113–124. Reference page. 

• Wynne, M.J. 2004. Evidence for the proposal of Hymenocladiopsis prolifera (Reinsch) comb. nov. (Rhodymeniales, Rhodophyta). Cryptogamie, Algologie 25: 261–274. Reference page. 
• Cassano, V., Yoneshigue-Valentin, Y. & Wynne, M. J. 2004. Elachistiella leptonematoides gen. et sp. nov. (Elachistaceae, Phaeophyceae) from Brazil. Phycologia 43: 329–340.

• Wynne, M.J. 2005. Chrysymenia tigillis sp. nov. (Rhodymeniales, Rhodophyta) from the Sultanate of Oman, with a census of currently recognized species in the genus Chrysymenia. Phycological Research 53(3): 215–223. Reference page. 

• Wynne, M.J. 2005. Re-examination of the type of Delesseria kurilensis Ruprecht (Delesseriaceae, Rhodophyta). Algae 20(4): 271–278, 4 figs. Reference page. 

• Wynne, M.J. 2005. A check-list of benthic marine algae of the tropical and subtropical western Atlantic: second revision. Beihefte zur Nova Hedwigia 129: 1–152. Reference page. 

• Wynne, M.J. 2005. Scinaia acuta, a new name proposed for Scinaia australis (Rhodophyta). Contributions from the University of Michigan Herbarium 24: 227–228, no figs. Reference page. 
• Wynne, M.J, Serio, D., Cormaci, M. & Furnari, G. 2005. The species of Chondrophycus and Laurencia (Rhodomelaceae, Ceramiales) occurring in Dhofar, the Sultanate of Oman. Phycologia 44: 497–509.

• Wynne, M.J. & Schneider, C.W. 2006. Balliella richardsii sp. nov. (Ceramiaceae, Rhodophyta) from Sultanate of Oman, Arabian Sea. Cryptogamie Algologie 27: 45–52, 5 figs. Reference page. 

• Wynne, M.J. 2007. Rhodymenia coccocarpa, a new combination based on Phyllophora coccocarpa Mont. Contributions from the University of Michigan Herbarium 25: 241–247, 4 figs. Reference page. 

• N'Yeurt, A.D.R., Wynne, M.J. & Payri, C.E. 2007. Myriogramme melanesiensis and M. heterostroma (Delesseriaceae, Rhodophyta), two new species from the Solomon Islands and Vanuatu. Contributions from the University of Michigan Herbarium 25: 213–224, 16 figs. Reference page. 

• Schneider, C.W. & Wynne, M.J. 2009 '2008'. Notes on the marine algae of the Bermudas. 10. Woelkerlingia sterreri sp. nov. (Rhodophyta, Wrangeliaceae), a first record of the genus in the western Atlantic. Caribbean Journal of Science 44: 303–310. DOI: 10.18475/cjos.v44i3.a5 Reference page. 

• Wynne, M.J. 2009. Marine algae and early explorations in the upper North Pacific and Bering Sea. Algae 24: 1–29. Reference page. 

• Berecibar, E., Wynne, M.J., Bárbara, I. & Santos, R. 2009. Records of Rhodophyta new to the flora of the Iberian Atlantic coast. Botanica Marina 52(3): 217–228, 26 figs. DOI: 10.1515/BOT.2009.040 Reference page. 

2010s

• Wynne, M.J. 2010. The transfer of Gelidiella trinitatensis W.R.Taylor (Gelidiales, Rhodophyta) to Parviphycus. Feddes Repertorium 121(3-4): 156–162. DOI: 10.1002/fedr.201011136 Reference page. 

• Wynne, M.J. 2011. A checklist of benthic marine algae of the tropical and subtropical western Atlantic: third revision. Nova Hedwigia Beihefte 140: [1] 7–166. Reference page. 

• Taskin, E., Wynne, M.J. & Öztürk, M. 2010. Cylindrocarpus kuckuckii sp. nov. (Chordariaceae, Phaeophyceae), a newly recognized species from the Aegean Sea (Turkey). Nova Hedwigia 90: 263–270. DOI: 10.1127/0029-5035/2010/0090-0263 Reference page. 

• Wynne, M.J. & Saunders, G.W. 2012. Taxonomic assessment of North American species of the genera Cumathamnion, Delesseria, Membranoptera and Pantoneura (Delesseriaceae, Rhodophyta) using molecular data. Algae. An International Journal of Algal Research 27(3): 155–173. Reference page. 

• Wynne, M.J. 2013. An older name for Lomentaria baileyana (Harvey) Farlow (Rhodymeniales, Rhodophyta). Brittonia 65: 113–117, 1 fig. Reference page. 

• Wynne, M.J. 2013. The validation of the names Pseudobranchioglossum and its type species Pseudobranchioglossum senegalense (Delesseriaceae, Rhodophyta). Cryptogamie, Algologie 34: 263–271, 4 figs. Reference page. 
• Gavio, B., Reyes-Gómez, V.P. & Wynne, M.J. 2013. Crouania pumila sp. nov. (Callithamniaceae: Rhodophyta), a new species of marine red algae from the Seaflower International Biosphere Reserve, Caribbean Colombia. Revista de Biología Tropical 61: 1015–1023.

• Wynne, M.J. 2014 '2013'. The red algal families Delesseriaceae and Sarcomeniaceae. pp. [1]–326, 118 figs. Königstein: Koeltz Scientific Books. Reference page. 

• Wynne, M.J. & Furnari, G. 2014. A census of J.P.L. [sic] Dangeard's invalid taxa with proposals to resolve the nomenclatural problems of some of them. Nova Hedwigia 98(3-4): 515–517. Reference page. 
• Wiriyadamrikul, J., Wynne, M.J. & Boo, S.M. 2014. Phylogenetic relationships of Dichotomaria (Nemalionales, Rhodophyta) with the proposal of Dichotomaria intermedia (R.C.Y. Chou) comb. nov.. Botanica Marina 57(1): 27–40.

• Sentíes, A., Wynne, M.J., Cassano, V., Díaz-Larrea, J., Gil-Rodríguez, M.C. & Fuji, M.T. 2015. Yuzurua iridescens (M.J. Wynne & D.L. Ballantine) comb. nov. (Ceramiales, Rhodophyta) from the Caribbean Sea: morphological and molecular evidence. Brazilian Journal of Botany 38(3): 605–613, 3 figs, 2 tables. Reference page. 

• Wynne, M.J. 2016. The transfer of Erythroglossum hyacinthinum J.C.Kang & M.S.Kim to Pseudopolyneura (Delesseriaceae, Rhodophyta). Notulae Algarum 15: 1–2. Reference page. 

• Vieira, C., Camacho, O., Wynne, M.J., Mattio, L., Anderson, R.J., Bolton, J.J., Sansón, M., D'hondt, S., Leliaert, F., Fredericq, S., Payri, C. & De Clerck, O. 2016. Shedding new light on old algae: Matching names and sequences in the brown algal genus Lobophora (Dictyotales, Phaeophyceae). Taxon 65(4): 689–707. DOI: 10.12705/654.1 Reference page. 
• Wynne, M.J. & Schneider, C.W. 2017. Phycoflabellina nomen novum (Delesseriaceae, Rhodophyta), a replacement name for Flabellina Selivanova & Zhigadalova (2016), nom. illeg., non Korde (1986). Notulae Algarum 28: 2, no figs.

• Díaz-Tapia, P., McIvor, L., Freshwater, D.W., Verbruggen, H., Wynne, M.J. & Maggs, C.A. 2017. The genera Melanothamnus Bornet & Falkenberg and Vertebrata S.F. Gray constitute well-defined clades of the red algal tribe Polysiphonieae (Rhodomelaceae, Ceramiales). European Journal of Phycology 52(1): 1–20, 77 figs. DOI: 10.1080/09670262.2016.1256436 Reference page. 

• Filloramo, G.V., Savoie, A.M., Selivanova, O.N., Wynne, M.J. & Saunders, G.W. 2017. Key Kamchatkan collections provide new taxonomic and distributional insights for reportedly pan-North Pacific species of Rhodymeniophycidae (Rhodophyta). Phycologia 56(3): 296–302, 5 fig. DOI: 10.2216/15-145.1 Reference page. 

• Wynne, M.J. 2018. The status of Polyostea Ruprecht (1850) and the proposal of Savoiea gen. nov. (Rhodomelaceae, Rhodophyta). Notulae Algarum 69: 1–4. PDF Reference page.