1992

• Garrido, O.H. & Hedges, S.B. 1992. Three new grass anoles (Sauria: Iguanidae) from Cuba. Caribbean Journal of Science 28: 21–29. PDF. Reference page. 

1995

• Estrada, A.R. & Hedges, S.B. 1995. A new species of Anolis (Sauria: Iguanidae) from eastern Cuba. Caribbean Journal of Science 31(1-2): 65–72. PDF. Reference page. 

2004

• Battistuzzi, F.U., Feijão, A. & Hedges, S.B. 2004. A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land. BMC Evol. Biol 4: 44. DOI: 10.1186/1471-2148-4-44 . Reference page. 

2008

• Hedges, S.B., Duellman, W.E. & Heinicke, M.P. 2008. New World direct-developing frogs (Anura: Terrarana): molecular phylogeny, classification, biogeography, and conservation. Zootaxa 1737: 1–182. Abstract & excerpt. Reference page. 

2009

• Adalsteinsson, S.A., Branch, W.R., Trape, S., Vitt, L.J. & Hedges, S.B. 2009. Molecular phylogeny, classification, and biogeography of snakes of the Family Leptotyphlopidae (Reptilia, Squamata). Zootaxa 2244: 1–50. Abstract & excerpt. Reference page. 

• Battistuzzi, F.U. & Hedges, S.B. 2009. A major clade of prokaryotes with ancient adaptations to life on land. Molecular biology and evolution. 26(2):335-43. DOI: 10.1093/molbev/msn247 . Reference page. 

• Heinicke, M.P., Duellman, W.E., Trueb, L., Means, D.B., MacCulloch, R.D. & Hedges, S.B. 2009. A new frog family (Anura: Terrarana) from South America and an expanded direct-developing clade revealed by molecular phylogeny. Zootaxa 2211: 1–35. Abstract & excerpt Reference page. 

2010

• Vidal, N, Marin J., Morini M., Donnellan S., Branch W.R., Thomas R., Vences M., Wynn A., Cruaud C. & Hedges S.B. 2010. Blindsnake evolutionary tree reveals long history on Gondwana. Biology Letters 6: 558–561.
• Battistuzzi, F.U., Filipski, A., Hedges, S.B., & Kumar, S. 2010. Performance of relaxed clock methods in estimating evolutionary divergence times and their credibility intervals. Mol. Biol. Evol. 27: 1289–1300.
• Hedges, S.B. 2010. Molecular clocks, flotsam, and Caribbean islands. Pp. 353–354 in Cox, C. B. & P. D. Moore, Biogeography: an ecological and evolutionary Approach. 8th Edition (John Wiley & Sons, Inc., Hoboken, New Jersey).
• Hedges, S.B. & Díaz, L.M. 2010. The conservation status of amphibians in the West Indies. In A. Hailey, B. S. Wilson, and J. A. Horrocks (Eds.), Conservation of Caribbean Island Herpetofaunas. Brill, Leiden, The Netherlands. (In press).
• Hedges, S.B. 2010. Amphibian conservation in the West Indies. In H. H. Heatwole and J. W. Wilkenson (Eds.) Status of Conservation and Decline of Amphibians: Western Hemisphere. Surrey Beatty & Sons, Chipping Norton, Australia. (In press).
• Kingdon, J.A., Seiffert, E.R., Hedges, S.B. & Rathbun, G. 2010. Supercohort Afrotheria. In J. A. Kingdon, D. Happold, and T. Butynski (Eds.) Mammals of Africa, Volume 1. The University of California Press. (in press).

2012

• McCranie, J.R. & Hedges, S.B. 2012. Two new species of geckos from Honduras and resurrection of Sphaerodactylus continentalis Werner from the synonymy of Sphaerodactylus millepunctatus Hallowell (Reptilia, Squamata, Gekkonoidea, Sphaerodactylidae). Zootaxa 3492: 65–76. Preview Reference page. 

2013

• Mccranie, J.R. & Hedges, S.B. 2013. Two additional new species of Sphaerodactylus (Reptilia, Squamata, Gekkonoidea, Sphaerodactylidae) from the Honduran Bay Islands. Zootaxa 3694(1): 40–50. DOI: 10.11646/zootaxa.3694.1.2 Reference page. 

2014

• Hedges, S.B., Marion, A.B., Lipp, K.M., Marin, J. & Vidal, N. 2014. A taxonomic framework for typhlopid snakes from the Caribbean and other regions (Reptilia, Squamata). Caribbean Herpetology 49: 1–61. Full article (PDF). Reference page. 

2015

• Heinicke, M.P., Barrio Amorós, C.L. & Hedges, S.B. 2015. Molecular and morphological data support recognition of a new genus of New World direct-developing frog (Anura: Terrarana) from an under-sampled region of South America. Zootaxa 3986(2): 151–172. DOI: 10.11646/zootaxa.3986.2.1 . Preview (PDF) Reference page. 

• Nagy, Z., Marion, A.B., Glaw, F., Miralles, A., Nopper, J., Vences, M. & Hedges, S.B. 2015. Molecular systematics and undescribed diversity of Madagascan scolecophidian snakes (Squamata: Serpentes). Zootaxa 4040(1): 31–47. DOI: 10.11646/zootaxa.4040.1.3 . Preview (PDF). Reference page. 

2016

• Duellman, W.E., Marion, A.B. & Hedges, S.B. 2016. Phylogenetics, classification, and biogeography of the treefrogs (Amphibia: Anura: Arboranae). Zootaxa 4104(1): 1–109. DOI: 10.11646/zootaxa.4104.1.1 . Reference page. 

• Köhler, G., Bobadilla, M.J.R. & Hedges, S.B. 2016. A new dune-dwelling lizard of the genus Leiocephalus (Iguania, Leiocephalidae) from the Dominican Republic. Zootaxa 4121(5): 517–532. DOI: 10.11646/zootaxa.4121.5.2 . Reference page. 

• Köhler, G. & Hedges, S.B. 2016. A revision of the green anoles of Hispaniola with description of eight new species (Reptilia, Squamata, Dactyloidae). Novitates Caribaea 9: 1–135. Full article (PDF) Reference page. 

• Tucker, D.B., Colli, G.R., Giugliano, L.G., Hedges, S.B., Hendry, C.R., Lemmon, E.M., Lemmon, A.R., Sites Jr., J.W. & Pyron, R.A. 2016. Methodological congruence in phylogenomic analyses with morphological support for teiid lizards (Sauria: Teiidae). Molecular Phylogenetics and Evolution 103: 75–84. DOI: 10.1016/j.ympev.2016.07.002 . Reference page. 

2018

• Landestoy T., M.A., Turner, D.B., Marion, A.B. & Hedges, S.B. 2018. A new species of Caribbean toad (Bufonidae, Peltophryne) from southern Hispaniola. Zootaxa 4403(3): 523–539. DOI: 10.11646/zootaxa.4403.3.6 Reference page.