1894

• Coquillett, D.W. 1894: New North American Trypetidae. Can. Entomol. 26: 71–75.

1898

• Coquillett, D.W. 1898: Report on a collection of Japanese Diptera, presented to the U.S. National Museum by the Imperial University of Tokyo. Proc. U.S. Natl. Mus. 21: 301–340

1899

• Coquillett, D.W. 1899: Diptera and Siphonaptera, p. 341-346. In W. H. Ashmead, ed., C. Appendices. 1. Reports on the insects, spiders, mites, and myriapods collected by Dr. L. Stejneger and Mr. G. E. H. Barrett-Hamilton on the Commander Islands, p. 328-351. In D. S. Jordan, The Fur Seals and Fur Seal Islands of the North Pacific Ocean. Pt. 4. Government Printing Office, Washington. 384 p.
• Coquillett, D.W. 1899: A new trypetid from Hawaii. Entomol. News, 10: 129–130.

1901

• Coquillett, D.W. 1901. New Diptera in the U.S. National Museum. Proceedings of the United States National Museum 23: 593–618.
• Coquillett, D.W. 1901. New Diptera from southern Africa. Proceedings of the United States National Museum [1902] 24: 27–32.
• Coquillett, D.W. 1901. Some insects of the Hudsonian Zone in New Mexico. Diptera. Psyche 9: 149–150.
• Coquillett, D.W. 1901. [Apocephalus n. gen.] p. 501 In Pergande, T. The ant decapitating fly. Proceedings of the Entomological Society of Washington 4(1): 497–502.

• Coquillett, D.W. 1901. Three new species of Diptera. Entomological news, 12: 16–18. BHL Reference page. 

1902

• Coquillett, D.W. 1902: New Diptera from North America. Proc. U.S. Natl. Mus. (1903) 25: 83–126 [= No. 1280].
• Coquillett, D.W. 1902: New acalyptrate Diptera from North America. J. N. Y. Ent. Soc. 10: 177–191.
• Coquillett, D.W. 1902: Three new species of Culex. Can. Ent. 34: 292–293.
• Coquillett, D.W. 1902: Three new species of nemoatcerous [sic] Diptera. Ent. News, 13: 84–85.
• Coquillett, D.W. 1902: New orthorrhaphous Diptera from Mexico and Texas. J. N.Y. Ent. Soc. 10: 136–141.

1903

• Coquillett, D.W. 1903: The occurrence of the phorid genus Aenigmatias in America. Can. Ent. 35: 20–22.
• Coquillett, D.W. 1903: A new culicid genus related to Corethra. Can. Ent. 35: 189–190.
• Coquillett, D.W. 1903: Four new species of Culex. Can. Ent. 35: 255–257.
• Coquillett, D.W. 1903: A new Anopheles with unspotted wings. Can. Ent. 35: 310.

1904

• Coquillett, D.W. 1904: Several new Diptera from North America. Can. Ent. 36: 10–12.
• Coquillett, D.W. 1904: Notes on Culex nigritulus. Ent. News, 15: 73–74.
• Coquillett, D.W. 1904: The genera of the dipterous family Empididae. (Addenda.) Proc. Ent. Soc. Wash. 6: 51–52.

1905

• Coquillett, D.W. 1905: A new cecidomyiid on cotton. Can. Ent. 37: 200.
• Coquillett, D.W. 1905: A new subapterous tipulid from New Mexico. Can. Ent. 37: 347.
• Coquillett, D.W. 1905: A new dexiid parasite of a Cuban beetle. Can. Ent. 37: 362.
• Coquillett, D.W. 1905: New nematocerous Diptera from North America. J. N.Y. Ent. Soc. 13: 56–69.

1906

• Coquillett, D.W. 1906: A new Tabanus related to punctifer. Ent. News, '17: 48.
• Coquillett, D.W. 1906: A new Culex near curriei. Ent. News, 17: 109.
• Coquillett, D.W. 1906: On the breaking-up of the old genus Culex. Science (N.Y.) n. ser., 23:. 312-314. [1906.02.03]

1907

• Coquillett, D.W. 1907: New genera and species of Diptera. Can. Ent. 39: 75–76.
• Coquillett, D.W. 1907: A new phorid genus with horny ovipositor. Can. Ent. 39: 207–208.
• Coquillett, D.W. 1907: Discovery of blood-sucking Psychodidae in America. Ent. News, 18: 101–102.
• Coquillett, D.W. 1907: Notes and descriptions of Hippoboscidae and Streblidae. Ent. News, 18: 290–292.

1909

• Coquillett, D.W. 1909: A new stratiomyid from Texas. Can. Ent. 41: 212.

1910

• Coquillett, D.W. 1910: New genera and species of North American Diptera. Proc. Ent. Soc. Wash. 12: 124–131.
• Coquillett, D.W. 1910: The type-species of the North American genera of Diptera. Proc. U.S. Natl. Mus. 37: 499–647.
• Coquillett, D.W. 1910: Corrections to my paper on the type-species of the North American genera of Diptera. Can. Ent. 42: 375–378.

1924

• Coquillett, D.W. 1924: A new genus and species of Trypetidae infesting asparagus in South Africa (Diptera). Proc. Ent. Soc. Wash. 26: 64–66.