2005

• Miralles, A. (2005) The identity of Lacertus mabouya Lacepede, 1788, with description of a neotype: an approach toward the taxonomy of New World Mabuya. Herpetologica, 61, 46–53.
• Miralles, A., Rivas, G. & Barrio-Amorós, C.L. (2005a) Taxonomy of the genus Mabuya (Reptilia, Squamata, Scincidae) in Venezuela. Zoosystema, 27, 825–837.
• Miralles, A., Rivas, G. & Schargel, W.E. (2005b) A new species of Mabuya (Squamata, Scincidae) from the Venezuelan Andes. Zootaxa, 895, 1–11.

2006

• Miralles, A. (2006a) A new species of Mabuya (Reptilia, Squamata, Scincidae) from the Caribbean Island of San Andrés. The Herpetological Journal, 16, 1–7.
• Miralles, A. (2006b) Speciation in the "Várzéa" flooded forest: a new Mabuya (Squamata, Scincidae) from Western Amazonia. Zootaxa, 1188, 1–22.

2009

• Miralles, A., Chaparro, J.C. & Harvey, M.B. 2009. Three rare and enigmatic South American Skinks. Zootaxa 2012: 47–68. Abstract & excerpt. Reference page. 
• Miralles, A., Rivas, G., Bonillo, C., Schargel, W.E., Barros, T., García-Pérez, J.E. & Barrio-Amorós, C.L. (2009b) Molecular systematics of Caribbean skinks of the genus Mabuya (Reptilia, Scincidae), with descriptions of two new species from Venezuela. Zoological Journal of the Linnean Society, 156, 598–616.

2010

• Miralles, A. & Carranza, S. (2010) Systematics and biogeography of the Neotropical genus Mabuya, with special emphasis on the Amazonian skink Mabuya nigropunctata (Reptilia, Scincidae). Molecular Phylogenetics and Evolution, 54, 857–869.

2011

• Miralles, A., Köhler, J., Glaw, F. & Vences, M. 2011. A molecular phylogeny of the "Madascincus polleni species complex", with description of a new species of scincid lizard from the coastal dune area of northern Madagascar. Zootaxa 2876: 1–16. Preview Reference page. 
• Miralles, A., Vasconcelos, R., Perera, A., Harris, D.J. & Carranza, S. (2011) An integrative taxonomic revision of the Cape Verdean skinks (Squamata, Scincidae). Zoologica Scripta, 40, 16–44.

2015

• Miralles, A., Glaw, F., Ratsoavina, F.M. & Vences, M. 2015. A likely microendemic new species of terrestrial iguana, genus Chalarodon, from Madagascar. Zootaxa 3946(2): 201–220. DOI: 10.11646/zootaxa.3946.2.3 . Preview Reference page. 

• Nagy, Z., Marion, A.B., Glaw, F., Miralles, A., Nopper, J., Vences, M. & Hedges, S.B. 2015. Molecular systematics and undescribed diversity of Madagascan scolecophidian snakes (Squamata: Serpentes). Zootaxa 4040(1): 31–47. DOI: 10.11646/zootaxa.4040.1.3 . Preview (PDF). Reference page. 

• Ratsoavina, F.M., Ranjanaharisoa, F.A., Glaw, F., Raselimanana, A.P., Miralles, A. & Vences, M. 2015. A new leaf-tailed gecko of the Uroplatus ebenaui group (Squamata: Gekkonidae) from Madagascar's central eastern rainforests. Zootaxa 4006(1): 143–160. DOI: 10.11646/zootaxa.4006.1.7 . Preview (PDF) Reference page. 

2016

• Miralles, A., Jono, T., Mori, A., Gandola, R., Erens, J., Köhler, J., Glaw, F. & Vences, M. 2016. A new perspective on the reduction of cephalic scales in fossorial legless skinks (Squamata, Scincidae). Zoologica Scripta 45(4): 380–393. DOI: 10.1111/zsc.12164 Reference page. 

• Miralles, A., Köhler, J., Glaw, F. & Vences, M. 2016. Species delimitation methods put into taxonomic practice: two new Madascincus species formerly allocated to historical species names (Squamata: Scincidae). Zoosystematics and Evolution 92(2): 257–275. DOI: 10.3897/zse.92.9945 Reference page.