The author name Aguirre may refer to:
- Ernesto Aguirre León (E.Aguirre), botanist
- Ernesto F. Aguirre-Ruiz, entomologist
- Gabriel Aguirre-Fernández
- Helmuth Aguirre, entomologist
- Ignacio Aguirre-Olavarrieta, botanist
- José Luis Castro Aguirre (1943-2011), ichthyologist
- Julio Aguirre (Jul.Aguirre), phycologist, paleobotanist
- Luis Aguirre, zoologist
- María Aguirre-Urreta, paleontologist
- Maria B. Aguirre, entomologist
- Maria Begoña Aguirre-Hudson or Maria Begoña Aguirre (M.B.Aguirre), lichenologist
- Martha Angélica Gutiérrez-Aguirre, carcinologist
- M. Leopoldina Aguirre-Macedo, parasitologist
- Vanessa Aguirre-Peñafiel, zoologist
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