Genus-group taxon Aenigma may refer to:
- Aenigma Newman, 1836 (Coleoptera:Carabidae); senior accepted homonym
- Aenigma Kuznetsova, 1957 (Ostracoda); junior homonym, replaced by Kuznetsovia Doweld, 2016
- Aenigma Koch, 1846 (Mollusca:Anomiidae); junior homonym, replaced by Enigmonia Iredale, 1918
- Aenigma Strecker, 1876 (Lepidoptera); junior homonym, and doubtful genus
- Aenigma Karsch, 1878 (Arachnida:Miturgidae); junior homonym, replaced by Argoctenus Karsch, 1878
- Aenigma Amsel, 1856 (Lepidoptera); junior homonym and doubtful genus
- Aenigma Omelko, 1988 (Lepidoptera); junior homonym and doubtful genus
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