1994

• Bauer, A.M., Lang, M. & Günther, R. 1994. An Annotated Type Catalogue of the Pygopods, Xantusiids, Gerrhosaurs and Cordylids (Reptilia: Squamata: Pygopodidae, Xantusiidae, Gerrhosauridae and Cordylidae) in the Collection of the Zoological Museum, Berlin. Mitteilungen aus dem Zoologischen Museum in Berlin 70(1): 85–92. DOI: 10.1002/mmnz.19940700103 Reference page. 

2002

• Bauer, A.M., Wallach, V. & Günther 2002. An annotated type catalogue of the scolecophidian, alethinophidian, and macrostomatan snakes in the collection of the Museum fur Naturkunde der Humboldt-Universitat zu Berlin. Zoosystematics and Evolution 78(1): 157–176. DOI: 10.1002/mmnz.20020780108 Reference page. 

2003

• Bauer, A.M. 2003. Descriptions of seven new Cyrtodactylus (Squamata: Gekkonidae) with a key to the species of Myanmar (Burma). Proceedings of California Academy Sciences 54: 463–498. Reference page. 

• Bauer, A.M., Sumontha, M. & Pauwels, 2003. Two new species of Cyrtodactylus (Reptilia: Squamata: Gekkonidae) from Thailand. Zootaxa 376: 001–018. Abstract & excerpt. . Reference page. 

2006

• Bauer, A.M., Jackman, T., Sadlier, R.A. & Whitaker, A.H. 2006. A new genus and species of diplodactylid gecko (Reptilia: Squamata: Diplodactylidae) from northwestern New Caledonia. Pacific Science 60(1): 125–135. DOI: 10.1353/psc.2005.0055 . Reference page. 

• Bauer, A.M.; Jackman, T.; Sadlier, R.A.; Whitaker, A.H. 2006: A revision of the Bavayia validiclavis group (Squamata: Gekkota: Diplodactylidae), a clade of New Caledonian geckos exhibiting microendemism. Proceedings of the California Academy of Sciences (4), 57(18): 503–547. PDF PDF Reference page. 

2007

• Makokha, J.S., Bauer, A.M., Mayer, W. & Matthee, C.A. 2007. Nuclear and mtDNA-based phylogeny of southern African sand lizards, Pedioplanis (Sauria: Lacertidae). Molecular Phylogenetics and Evolution 44(2): 622–633. DOI: 10.1016/j.ympev.2007.04.021 Reference page. 

2008

• Bauer, A.M., Jackman, T.R., Sadlier, R.A., Shea, G. & Whitaker, A.H. 2008. A new small-bodied species of Bavayia (Reptilia: Squamata: Diplodactylidae) from southeastem New Caledonia. Pacific Science 62(2): 247–256. DOI: 10.2984/1534-6188(2008)62[247:ANSSOB]2.0.CO;2 . Reference page. 

• Ngo, V.T. & Bauer, A.M. 2008. Descriptions of two new species of Cyrtodactylus Gray, 1827 (Squamata: Gekkonidae) endemic to southern Vietnam. Zootaxa 1715: 27–42. Abstract & excerpt. . Reference page. 

2011

• Nielsen, S.V., Bauer, A.M., Jackman, T.R., Hitchmough, R.A., Daugherty, C.H. 2011. New Zealand geckos (Diplodactylidae): cryptic diversity in a post-Gondwanan lineage with trans-Tasman affinities. Molecular Phylogenetics and Evolution 59(1): 1–22. DOI: 10.1016/j.ympev.2010.12.007 . Reference page. 

• Agarwal, I., Giri, V.B. & Bauer, A.M. 2011. A new cryptic rock-dwelling Hemidactylus (Squamata: Gekkonidae) from south India. Zootaxa 2765: 21–37. Preview. Reference page. 

• Stanley, E.L., Bauer, A.M., Jackman, T.R., Branch, W.R. & Mouton, P. Le F.N. 2011. Between a rock and a hard polytomy: Rapid radiation in the rupicolous girdled lizards (Squamata: Cordylidae). Molecular Phylogenetics and Evolution 58(1): 53–70. DOI: 10.1016/j.ympev.2010.08.024 Reference page. 

2012

• Bauer, A.M., Jackman, T.R., Sadlier, R.A. & Whitaker, A.H. 2012. Revision of the giant geckos of New Caledonia (Reptilia: Diplodactylidae: Rhacodactylus). Zootaxa 3404: 1–52. Preview. . Reference page. 

• Grismer, L.L., Wood Jr, P.L., Quah, E.S.H., Anuar Mohd Sah, S., Muin, M.A., Sumontha, M., Ahmad, N., Bauer, A.M., Wangkulangkul, S., Grismer, J.L. & Pauwels, O.S.G. 2012. A phylogeny and taxonomy of the Thai-Malay Peninsula bent-toed geckos of the Cyrtodactylus pulchellus complex (Squamata: Gekkonidae): combined morphological and molecular analyses with descriptions of seven new species. Zootaxa 3520: 1–55. Preview. Reference page. 

2015

• Bolet, A., Daza, J.D., Augé, M. & Bauer, A.M. 2015. New genus and species names for the Eocene lizard Cadurcogekko rugosus Augé, 2005. Zootaxa 3985(2): 265–274. DOI: 10.11646/zootaxa.3985.2.5 Reference page. 

• Botov, A., Phung, T.M., Nguyen, T.Q., Bauer, A.M., Brennan, I.G. & Ziegler, T. 2015. A new species of Dixonius (Squamata: Gekkonidae) from Phu Quy Island, Vietnam. Zootaxa 4040(1): 48–58. DOI: 10.11646/zootaxa.4040.1.4 . Preview (PDF). Reference page. 

• Jono, T., Bauer, A.M., Brennan, I.G. & Mori, A. 2015. New species of Blaesodactylus (Squamata: Gekkonidae) from Tsingy karstic outcrops in Ankarana National Park, northern Madagascar. Zootaxa 3980(3): 406–416. DOI: 10.11646/zootaxa.3980.3.4 . Preview (PDF). Reference page. 

• Murthy, B.H.C.K., Bauer, A.M., Lajmi, A., Agarwal, I. & Giri, V.B. 2015. A new rock dwelling Hemidactylus (Squamata: Gekkonidae) from Chhattisgarh, India. Zootaxa 4021(2): 334–350. DOI: 10.11646/zootaxa.4021.2.5 . Preview (PDF). Reference page. 

2016

• Agarwal, I., Mirza, Z.A., Pal, S., Maddock, S.T., Mishra, A. & Bauer, A.M. 2016. A new species of the Cyrtodactylus (Geckoella) collegalensis (Beddome, 1870) complex (Squamata: Gekkonidae) from Western India. Zootaxa 4170(2): 339–354. DOI: 10.11646/zootaxa.4170.2.7 . Reference page. 

• Carranza, S. & Bauer, A.M. 2016. Margarita Metallinou (1985–2015). Zootaxa 4132(4): 598–600. DOI: 10.11646/zootaxa.4132.4.13 . Full article (PDF) Reference page. 

• Ceríaco, L.M.P., Marques, M.P. & Bauer, A.M. 2016. A review of the genus Trachylepis (Sauria: Scincidae) from the Gulf of Guinea, with descriptions of two new species in the Trachylepis maculilabris (Gray, 1845) species complex. Zootaxa 4109(3): 284–314. DOI: 10.11646/zootaxa.4109.3.2 . Reference page. 

• Karin, B.R., Das, I. & Bauer, A.M. 2016. Two new species of diminutive leaf-litter skinks (Squamata: Scincidae: Tytthoscincus) from Gunung Penrissen, Sarawak, Malaysia (northern Borneo). Zootaxa 4093(3): 407–423. DOI: 10.11646/zootaxa.4093.3.7 Reference page. 

• Malonza, P.K., Bauer, A.M. & Ngwava, J.M. 2016. A new species of Letheobia (Serpentes: Typhlopidae) from central Kenya. Zootaxa 4093(1): 143–150. DOI: 10.11646/zootaxa.4093.1.10 Reference page. 

• Mazuch, T., Šmíd, J. & Bauer, A.M. 2016. Rediscovery and a new record of Hemidactylus laevis (Reptilia: Gekkonidae) from Somaliland, with notes on and resurrection of Hemidactylus fragilis. Zootaxa 4117(4): 529–542. DOI: 10.11646/zootaxa.4117.4.5 . Reference page. 

• Medina, M.F., Bauer, A.M., Branch, W.R., Schmitz, A., Conradie, W., Nagy, Z.T., Hibbitts, T.J., Ernst, R., Portik, D.M., Nielsen, S.V., Colston, T.J., Kusamba, C., Behangana, M., Rödel, M.-O. & Greenbaum, E. 2016. Molecular phylogeny of Panaspis and Afroablepharus skinks (Squamata: Scincidae) in the savannas of sub-Saharan Africa. Molecular Phylogenetics and Evolution 100: 409–423. DOI: 10.1016/j.ympev.2016.04.026 Reference page. 

• Pauwels, O.S.G., Sumontha, M. & Bauer, A,M. 2016. A new Bent-toed Gecko (Squamata: Gekkonidae: Cyrtodactylus) from Phetchaburi Province, Thailand. Zootaxa 4088(3): 409–419. DOI: 10.11646/zootaxa.4088.3.6 .Reference page. 

• Ziegler, T., Botov, A., Nguyen, T.T., Bauer, A.M., Brennan, I.G., Ngo, H.T. & Nguyen, T.Q. 2016. First molecular verification of Dixonius vietnamensis Das, 2004 (Squamata: Gekkonidae) with the description of a new species from Vinh Cuu Nature Reserve, Dong Nai Province, Vietnam. Zootaxa 4136(3): 553–566. DOI: 10.11646/zootaxa.4136.3.7 . Reference page. 

2017

• Allen, K.E., Tapondjou N., W.P., Welton, L.J. & Bauer, A.M. 2017. A new species of Trachylepis (Squamata: Scincidae) from Central Africa and a key to the Trachylepis of West and Central Africa. Zootaxa 4268(2): 255–269. DOI: 10.11646/zootaxa.4268.2.5 . Reference page. 

• Pui, Y.M., Karin, B.R., Bauer, A.M. & Das, I. 2017. A new species of Tropidophorus Duméril & Bibron, 1839 (Squamata: Sauria: Scincidae) from Sarawak, East Malaysia (Borneo). Zootaxa 4258(6): 539–550. DOI: 10.11646/zootaxa.4258.6.3 Reference page. 

• Ceríaco, L.M.P., Marques, M.P., Schmitz, A. & Bauer, A.M.. 2017. The “Cobra-preta” of São Tomé Island, Gulf of Guinea, is A New Species of Naja Laurenti, 1768 (Squamata: Elapidae). Zootaxa 4324(1): 121–141. DOI: 10.11646/zootaxa.4324.1.7 . Reference page. 

• Heinicke, M.P., Turk, D. & Bauer, A.M. 2017. Molecular phylogeny reveals strong biogeographic signal and two new species in a Cape Biodiversity Hotspot endemic mini-radiation, the pygmy geckos (Gekkonidae: Goggia). Zootaxa 4312(3): 449–470. DOI: 10.11646/zootaxa.4312.3.3 . Reference page. 

• Giri, V.B., Bauer, A.M., Mohapatra, P.P., Srinivasulu, C. & Agarwal, I. 2017. A New Species of Large-bodied, Tuberculate Hemidactylus Oken (Squamata: Gekkonidae) from the Eastern Ghats, India. Zootaxa 4347(2): 331–345. DOI: 10.11646/zootaxa.4347.2.8 . Reference page. 

2018

• Agarwal, I., Khandekar, A. & Bauer, A.M. 2018. A new bent-toed gecko (Squamata: Gekkonidae: Cyrtodactylus) from the Western Himalayas, Himachal Pradesh, India. Zootaxa 4446(4): 442–454. DOI: 10.11646/zootaxa.4446.4.2 . Reference page. 

• Agarwal, I., Mahony, S., Giri, V.B., Chaitanya, R. & Bauer, A.M. 2018. Two new species of bent toed geckos, Cyrtodactylus Gray, 1827 (Squamata: Gekkonidae) from Northeast India with comments on name-bearing types from the region. Zootaxa 4420(3): 334–356. DOI: 10.11646/zootaxa.4420.3.2 Reference page. 

• Ceríaco, L.M.P., Marques, M.P., Bandeira, S., Agarwal, I., Stanley, E.L., Bauer, A.M., Heinicke, M.P. & Blackburn, D.C. 2018. A new earless species of Poyntonophrynus (Anura, Bufonidae) from the Serra da Neve Inselberg, Namibe Province, Angola. ZooKeys 780: 109–136. DOI: 10.3897/zookeys.780.25859 Reference page. 

• Ceríaco, L.M.P., Branch, W.R. & Bauer, A.M. 2018. A new species of African snake-eyed skink (Scincidae: Panaspis) from central and northern Namibia. Zootaxa 4527(1): 140–150. DOI: 10.11646/zootaxa.4527.1.12 Reference page. 

• Ceríaco, L.M.P., Marques, M.P. & Bauer, A.M. 2018. Miscellanea Herpetologica Sanctithomae, with a provisional checklist of the terrestrial herpetofauna of São Tomé, Príncipe and Annobon islands. Zootaxa 4387(1): 91–108. DOI: 10.11646/zootaxa.4387.1.4 Reference page. 

• Karin, B.R., Freitas, E.S., Shonleben, S., Grismer, L.L., Bauer, A.M. & Das, I. 2018. Unrealized diversity in an urban rainforest: A new species of Lygosoma (Squamata: Scincidae) from western Sarawak, Malaysia (Borneo). Zootaxa 4370(4): 345–362. DOI: 10.11646/zootaxa.4370.4.2 Reference page. 

2019

• Batuwita, S., Agarwal, I. & Bauer, A.M. 2019. Description of a new diminutive, rupicolous species of day-gecko (Squamata: Gekkonidae: Cnemaspis) from southern Sri Lanka. Zootaxa 4565(2): 223–234. DOI: 10.11646/zootaxa.4565.2.6 . Reference page. 

• Karunarathna, S., Bauer, A.M., De Silva, A., Surasinghe, T., Somaratna, L., Madawala, M., Gabadage, D., Botejue, M., Henkanaththegedara, S., Ukuwela, K.D.B. 2019. Description of a new species of the genus Cnemaspis Strauch, 1887 (Reptilia: Squamata: Gekkonidae) from the Nilgala Savannah forest, Uva Province of Sri Lanka. Zootaxa 4545(3): 389–407. DOI: 10.11646/zootaxa.4545.3.4 . Reference page. 

• Marques, M.P., Ceríaco, L.M.P., Bandeira, S., Pauwels, O.S.G. & Bauer, A.M. 2019. Description of a new long-tailed skink (Scincidae: Trachylepis) from Angola and the Democratic Republic of the Congo. Zootaxa 4568(1): 51–68. DOI: 10.11646/zootaxa.4568.1.3 . Reference page.