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I have a PCI USB riser like this one:

I have 2 identical video cards with one plugged directly into the motherboard and one plugged in via the PCI riser. I am seeing a hash rate of 290 KH/s on the one directly connected to the motherboard and 210 KH/s on the one connected via the riser. The riser is connected to the PSU so it is powered. There is no need to short the PCI slot. I have tried this riser in both a PCI x1 slot and PCI x16 slot with the same results. The video cards are both GTX 580.
Could the added latency of going through a USB wire account for this decrease in hash rate?
Using another video card (GTX 750 Ti FTW), I was able to confirm a decrease of about 100 KH/s while connected to the PCI USB riser. I have tried 2 separate risers with 2 separate video cards and every time a PCI USB riser is involved, my hash rate is lower than when connected directly to the motherboard. The motherboard is a Gigabyte GA-X58A-UD3R. The BIOS has been updated and I only see BIOS options to change the PCI Express Frequency and PCI Express Clock Drive.
I am having a hard time finding an answer online and I need experts, please help. If these USB risers decrease the hashing power then I'm not sure why people want them. I want them for the added distance I need between my motherboard and GPUS in my setup but perhaps I should alter my setup to allow for the ribbon cable riser version. I appreciate your recommendations. Could there be a setting that accounts for this latency and keeps an optimal hashing power?
2Swap the cards, see if the difference is still there. Eliminate variables. The latency in the cable is negligible anyway. – user13413 – 2014-02-27T02:09:48.520
Swapping the cards has no difference. – Scott – 2014-02-27T16:52:06.740
1That doesn't make much sense to me, I can't explain it. – user13413 – 2014-02-28T03:16:57.583
1What version of USB are the port and the device on? USB is not just a hardware connector specification, it comes with its own layer-1 protocol - a serial protocol, by the way - so the rate at which it transmits info. back and forth would definitely be affected depending on the version (I wouldn't use anything but 3) – Joe Pineda – 2014-03-16T13:20:52.657
1Another question, at what difficulty are you mining? You could tweak your miner params (increasing diff?) so the cards do as much work as possible on their own without relying too much on the motherboard to provide them data - that way the USB comm. bottleneck would be avoided. – Joe Pineda – 2014-03-16T13:30:27.953
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yes. You are transferring data through a device with smaller bandwith. Also today USB3 should be used. A longer thread is here: http://cryptomining-blog.com/tag/pci-e-usb-riser/
– pebwindkraft – 2018-02-25T09:06:40.687